News Archive

  • JianJun Shen, PhD, Director of the Molecular Biology facilty core, and his staff will be offering an informational and instructional workshop on June 15th starting at 1:30pm. Newly acquired instrumention associated with the Next Generation Sequence Core will be covered. Specifically:

     

    • Showcase the Illumina HiSeq2000 and MiSeq, which can be employed for RNA-Seq, ChIP-Seq, exome resequencing, targeted resequencing, methylation sequencing and whole genome sequencing.
    • Demo the Agilent 2100 Bioanalyzer that is a microfluidics-based platform for sizing, quantification and quality control of DNA, RNA, proteins and cells.
    • Demo the Qubit Fluorometer that quantitates DNA, RNA, and protein.
    • Training on the Covaris Ultrasonicator S220 that uses Adaptive Focused Acoustics (AFA) to fragment DNA with mechanical energy.

     

     

     

  • Inkyu Han, PhD, MPH has join The University of Texas Health Science Center – Houston School of Public Health in the Department of Epidemiology, Human Genetics & Environmental Sciences as an Assistant Professor. His research program has two focuses. The first research focus is to understand the impacts of occupational and environmental exposure to pollutants in the air, water, food, dust and soil on human health. The second research focus is to understanding the associations between exposure to pollutants and biological response by measuring biological markers of exposure, dose, and biologically effective does. Dr. Han received his MPH from Seoul National University School of Public Health where he studied the effects of nutrients on bioremediation of disease oil contaminated soils. Subsequently, Dr. Han earned his doctorate from the University of Medicine and Dentistry of New Jersey. His dissertation focused on urinary 1-hydroxypyrene in non-smokers as a biomarker for coke oven smoke exposure in general urban PAH exposure. Previous to joining the School of Public Health, he completed his postdoctoral fellowship at Johns Hopkins Bloomberg School of Public Health where his research focused on the characterization of ambient air particle matter.

    Dr. Han was awarded the 2012 CRED Career Development Award to recruit junior faculty to the Center. His project is entitled ‘Effects of Heat and Air Pollutants on Childhood Asthma in an Urban Community.’ The overall goal of the proposed project is to examine the health effects of heat-related  exposures (temperature, humidity, solar radiation) and air pollution in children with asthma. This study is designed to test the following hypotheses: (1) Daily personal exposure to heat and air  pollutants worsen asthma, manifested by increased asthma symptoms, increased use of asthma medication, and/or reduction in lung function in asthmatic children, dependent on the exposure dose; (3) This worsening of asthma is accompanied by an increase in inflammatory marker of the airways, as reflected by increases in exhaled nitric oxide (NO) concentrations.

     

  • COEC has recruited 11 undergraduate students and 10 high school students for the 2012 research program. Fourteen (14) students will be working at the Science Park, three (3) at the University of Texas at Austin, College of Pharmacy, and four (4) at the Keeling Center for Comparative Medicine and Research in Bastrop. The program is scheduled to start on June 11th and end on August 17th. The program includes a number of educational and social activities, including a lunch lecture series. Started and organized by the post-doctoral fellows at Science Park, the weekly lunch lectures provide an introduction to basic scientific topics such as carcinogenesis, animal models, molecular biology, flow cytometry and emerging analytic techniques. Student interns learn about the on-going research at each the campuses and the fellows have an opportunity to teach. On the last day, interns will participate in the Summer Scientific Symposium where they present a 10-minute talk describing their research results to an audience of their peers along with faculty, trainees and staff.

  • In November 2011, Dr. JianJun Shen, Director of the Molecular Biology Facility Core, was awarded a CPRIT Core Facility Support grant for nearly $6M to establish a Next Generation Sequencing (NGS) facility at Science Park and to support its operation for 5 years. The construction of core facility has been completed and the equipment has been acquired. The instrumentation includes:

     1) an Illumina HiSeq2000 2) an Illumina MiSeq3) an Illumina cBot Cluster GenerationSystem4) a primary computing server 5) a secondary smaller server6) Illumina and open source software 7) a Covaris S220 for DNA shearing8) a Beckman Coulter SPRI-TE: SPRIworks Fragment Library System I9) an Agilent 2100 Bioanalyzer The NGS core is currently offering RNA-Seq services, and will be offering ChIP-Seq, exome resequencing, targeted resequencing, methylation sequencing and whole genome sequencing services shortly. For the grant abstract visit the CPRIT site. For more information on CPRIT awards to MD Andersonview the Press Release

     

  • On June 1, 2012, Dr. Donna Kusewitt, Director of the CRED Integrated Imaging Pathogy and Histology Core, received a CPRIT Shared Instrumentation Award to support the purchase of an IVIS Spectrum, the most versatile and advanced in vivo imaging system for experimental animals currently available. The almost $700,000, three-year award also includes funds for instrument installation, advanced training in imaging techniques for IIPH personnel, and pilot projects to encourage rapid incorporation of in vivo imaging capabilities into ongoing research projects. The IVIS Spectrum will be housed in the Science Park animal facility, allowing repeated imaging of animals on study. The IIPH Core will supervise instrument maintenance and operation; IIPH Core personnel will provide IVIS Spectrum imaging services or train CRED investigators to use the instrument independently.

    The IVIS Spectrum is the most technologically sophisticated small animal in vivo imaging instrument now available. The Spectrum performs bioluminescent and fluorescent imaging, spectral imaging, and spectral unmixing, thus multiple bioluminescent and fluorescent reporters across the blue to near infrared wavelength region can be visualized simultaneously. Three-dimensional topographic imaging capabilities localize these reporters in an anatomical context. Flexible field of view settings allow for single cell resolution or imaging up to five mice at once. Bioluminescent imaging is the preferred approach for non-invasive deep tissue optical imaging, because the signal emitted has excellent tissue penetration and can be detected with high sensitivity and specificity. However, fluorescent imaging is useful for specific purposes, including tracking the biodistribution of fluorescently labeled substrates and antibodies in living animals and rapid, inexpensive screening of transfected cell lines. With the Spectrum, appropriately labeled autochthonous or engrafted cells, both tumor cells and other cell types, can be imaged quantitatively. The system is ideal for longitudinal studies, allowing repeated and sensitive measures of the localization, trafficking, and expansion of labeled cells. Such longitudinal in vivo studies have many advantages over studies based on serial sacrifice. Because each animal provides data at multiple time points and because study endpoints can be more specifically identified, fewer animals are required and considerably more quantitative information is garnered. Recently developed techniques employ the Spectrum to image protein-protein interactions in vivo. Moreover, optical imaging can be used to detect some b+, b-, and g emitters that trigger light emission in the 490-850 nm range, providing some of the imaging capabilities of PET and SPECT. Thus, the IVIS Spectrum will provide a wide variety of novel experimental approaches to CRED researchers